I couldn't build your attached project due to missing header files. One thing I observed though, when I imported your project, was that the spiboot.cmd linker command file was excluded from build. Assuming this was just an oversight in the project that was sent to me and that .cmd file is actually part of the build, I would suggest adding a #pragma RETAIN to ensure the section is not removed by the linker. The syntax and information on #pragma RETAIN is in the C6000 Compiler Users Guide.
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